Selected UCSC Cancer Genomics Browser Publications

Cline MS, Craft B, Swatloski T, Goldman M, Ma S, Haussler D, Zhu J. Exploring TCGA Pan-Cancer Data at the UCSC Cancer Genomics Browser. Scientific Reports. 2013;3:2652. doi: 10.1038/srep02652.

Lopez-Bigas N, Cline M, Broom B, Margolin A, Omberg L, Weinstein J, Axton M. Thread 4: Data discovery, transparency and visualization. Nature Genetics 2013; 45(10). doi:10.1038/ng.2789.

Goldman M, Craft B, Swatloski T, Ellrott K, Cline M, Diekhans M, Ma S, Wilks C, Stuart J, Haussler D, Zhu J. The UCSC Cancer Genomics Browser: update 2013. Nucleic Acids Research 2012; doi: 10.1093/nar/gks1008.

Sanborn JZ, Benz SC, Craft B, Szeto C, Kober KM, Meyer L, Vaske CJ, Goldman M, Smith KE, Kuhn RM et al. The UCSC cancer genomics browser: update 2011. Nucleic Acids Research 2011;39(suppl 1):D951-D959.

Vaske CJ, Benz SC, Sanborn JZ, Earl D, Szeto C, Zhu J, Haussler D, Stuart JM. Inference of patient-specific pathway activities from multi-dimensional cancer genomics data using PARADIGM. Bioinformatics. 2010;26(12):i237-i245.

Zhu J, Sanborn JZ, Benz S, Szeto C, Hsu F, Kuhn RM, Karolchik D, Archie J, Lenburg ME, Esserman LJ et al. The UCSC Cancer Genomics Browser. Nature Methods. 2009;6:239-40.